Flipper and Lopaka follows the adventures of Lopaka, a boy granted the ability to speak with marine animals, on his tribe's island home and the undersea city of Quetzo.
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| Title | Air Date | Duration | ||
|---|---|---|---|---|
| Season 1 | Episode 1 | The Lost City | 1999-01-01 | 25 min |
| Season 1 | Episode 2 | The Secrets of Quetzo | 1999-01-02 | 25 min |
| Season 1 | Episode 3 | The Volcano | 1999-01-03 | 25 min |
| Season 1 | Episode 4 | The White Whale | 1999-01-04 | 25 min |
| Season 1 | Episode 5 | Lopaka's Gift | 1999-01-05 | 25 min |
| Season 1 | Episode 6 | The Showdown | 1999-01-06 | 25 min |
| Season 1 | Episode 7 | The Good Shark | 1999-01-07 | 25 min |
| Season 1 | Episode 8 | The Sea Serpent | 1999-01-08 | 25 min |
| Season 1 | Episode 9 | The Drought | 1999-01-09 | 25 min |
| Season 1 | Episode 10 | Lights, Camera, Dexter! | 1999-01-10 | 25 min |
| Season 1 | Episode 11 | King for a Minute | 1999-01-11 | 25 min |
| Season 1 | Episode 12 | The Castaway | 1999-01-12 | 25 min |
| Season 1 | Episode 13 | The Little Blue Fish | 1999-01-13 | 25 min |
| Season 1 | Episode 14 | The Oil Spill | 1999-01-14 | 25 min |
| Season 1 | Episode 15 | The Circus | 1999-01-15 | 25 min |
| Season 1 | Episode 16 | The Sting of the Stonefish | 1999-01-16 | 25 min |
| Season 1 | Episode 17 | The Secret Weapon | 1999-01-17 | 25 min |
| Season 1 | Episode 18 | Dexter's Wedding | 1999-01-18 | 25 min |
| Season 1 | Episode 19 | High Tide | 1999-01-19 | 25 min |
| Season 1 | Episode 20 | Dexter's Delinquents | 1999-01-20 | 25 min |
| Season 1 | Episode 21 | Girl Power | 1999-01-21 | 25 min |
| Season 1 | Episode 22 | Bolo the Runaway | 1999-01-22 | 25 min |
| Season 1 | Episode 23 | Surf's Up! | 1999-01-23 | 25 min |
| Season 1 | Episode 24 | The Trap | 1999-01-24 | 25 min |
| Season 1 | Episode 25 | The Monster from Quetzo | 1999-01-25 | 25 min |
| Season 1 | Episode 26 | The Homecoming | 1999-01-26 | 25 min |
| Season 2 | Episode 1 | Mysterious Island | 2002-01-01 | 25 min |
| Season 2 | Episode 2 | Strangers in Paradise | 2002-01-02 | 25 min |
| Season 2 | Episode 3 | The Eclipse | 2002-01-03 | 25 min |
| Season 2 | Episode 4 | Secret of the Seven Crystals | 2002-01-04 | 25 min |
| Season 2 | Episode 5 | Puffy the Pied Piper | 2002-01-05 | 25 min |
| Season 2 | Episode 6 | Treasure Hunt | 2002-01-06 | 25 min |
| Season 2 | Episode 7 | The Big Wave | 2002-01-07 | 25 min |
| Season 2 | Episode 8 | Flying is Not for the Foolish | 2002-01-08 | 25 min |
| Season 2 | Episode 9 | Dexter's Big Gulp | 2002-01-09 | 25 min |
| Season 2 | Episode 10 | Magic Medicine | 2002-01-10 | 25 min |
| Season 2 | Episode 11 | Terrible Titan of Tabu | 2002-01-11 | 25 min |
| Season 2 | Episode 12 | The Crystal Cave | 2002-01-12 | 25 min |
| Season 2 | Episode 13 | Big Bones | 2002-01-13 | 25 min |
| Season 2 | Episode 14 | Ghosts and Monsters | 2002-01-14 | 25 min |
| Season 2 | Episode 15 | Legend of the Sea Dragons | 2002-01-15 | 25 min |
| Season 2 | Episode 16 | Goose's Ghost | 2002-01-16 | 25 min |
| Season 2 | Episode 17 | Electric Soup | 2002-01-17 | 25 min |
| Season 2 | Episode 18 | Day of Rest | 2002-01-18 | 25 min |
| Season 2 | Episode 19 | All Great Creatures | 2002-01-19 | 25 min |
| Season 2 | Episode 20 | The Carnival | 2002-01-20 | 25 min |
| Season 2 | Episode 21 | The Visitors | 2002-01-21 | 25 min |
| Season 2 | Episode 22 | Fire and Ice | 2002-01-22 | 25 min |
| Season 2 | Episode 23 | Flipper's Twin | 2002-01-23 | 25 min |
| Season 2 | Episode 24 | Holiday Island | 2002-01-24 | 25 min |
| Season 2 | Episode 25 | Mirror, Mirror | 2002-01-25 | 25 min |
| Season 2 | Episode 26 | Edge of Doom | 2002-01-26 | 25 min |
| Season 3 | Episode 1 | Something Old, Something New | 2004-01-01 | 25 min |
| Season 3 | Episode 2 | Starstruck | 2004-01-02 | 25 min |
| Season 3 | Episode 3 | Sink or Swim | 2004-01-03 | 25 min |
| Season 3 | Episode 4 | Island Idol | 2004-01-04 | 25 min |
| Season 3 | Episode 5 | Blasts from the Past | 2004-01-05 | 25 min |
| Season 3 | Episode 6 | Dolphin Deception | 2004-01-06 | 25 min |
| Season 3 | Episode 7 | Murky Waters | 2004-01-07 | 25 min |
| Season 3 | Episode 8 | Leaps of Faith | 2004-01-08 | 25 min |
| Season 3 | Episode 9 | Secrets and Lies | 2004-01-09 | 25 min |
| Season 3 | Episode 10 | Crash Course Crisis | 2004-01-10 | 25 min |
| Season 3 | Episode 11 | Dads and Lads | 2004-01-11 | 25 min |
| Season 3 | Episode 12 | Charming Disarmings | 2004-01-12 | 25 min |
| Season 3 | Episode 13 | Friends in Need | 2004-01-13 | 25 min |
| Season 3 | Episode 14 | Pipe Dreams | 2004-01-14 | 25 min |
| Season 3 | Episode 15 | Dexter's Demons | 2004-01-15 | 25 min |
| Season 3 | Episode 16 | Tossed, Lost and Bossed | 2004-01-16 | 25 min |
| Season 3 | Episode 17 | Bad Boy Flipper | 2004-01-17 | 25 min |
| Season 3 | Episode 18 | In Sickness and Health | 2004-01-18 | 25 min |
| Season 3 | Episode 19 | Space Junked | 2004-01-19 | 25 min |
| Season 3 | Episode 20 | Roboshark | 2004-01-20 | 25 min |
| Season 3 | Episode 21 | He Ain't Heavy, He's My Statue | 2004-01-21 | 25 min |
| Season 3 | Episode 22 | Trident Trickery | 2004-01-22 | 25 min |
| Season 3 | Episode 23 | Guess Who's Coming for Dinner | 2004-01-23 | 25 min |
| Season 3 | Episode 24 | Family Ties | 2004-01-24 | 25 min |
| Season 3 | Episode 25 | Trident Au Go Go | 2004-01-25 | 25 min |
| Season 3 | Episode 26 | Destiny's Children | 2005-01-01 | 25 min |
| Directing | Susan Oliver | Director |
